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Intron Name: Anas_platyrhynchos_platyrhynchos_10_16047198_16052115_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16047198 - 16052115

Intron Length:

4918

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCGTA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TCTTTCTCAAAC

Flanking Amino Acid:

MRKTVQTNTTGKTRTKEKYR

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

74.2

36.5

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

0.54

0.9

70.3

34.1

Minor 5ss

40.1

-1.1

3.4

52.2

Minor BPS

0.35

1.7

71.5

39.6

Associated Gene:

Gene:

CDX4

Ensembl Gene ID:

ENSAPLG00000009172

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009560

16046765 - 16055183

8419