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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16052262_16054928_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16052262 - 16054928
Intron Length:
2667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAGA
5'SS Class:
major
3'SS Sequence:
TATAACATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
GCTGCCTTAAAC
Flanking Amino Acid:
AANLGLSERQVKIWFQNRRA
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.4
43.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
71.6
0.49
1
63.5
42
Minor 5ss
37
-1.5
3.2
49.1
46.7
Minor BPS
64.7
0.44
1.6
68.33
42.9

Associated Gene:

Gene:
CDX4
Ensembl Gene ID:
ENSAPLG00000009172
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009560
16046765 - 16055183
8419