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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16065718_16079247_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16065718 - 16079247
Intron Length:
13530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
GCTTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTCCTCTGAAGT
Flanking Amino Acid:
GGTGRRAHHRVAPEEFKTSI
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
57.3
47.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
78.7
0.65
0.9
72.4
37.7
Minor 5ss
33.7
-1.9
3.2
40.5
45.4
Minor BPS
54.7
0.22
1.8
73.74
43.1

Associated Gene:

Gene:
CHIC1
Ensembl Gene ID:
ENSAPLG00000003475
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037357
16065499 - 16083498
18000