About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16083156_16083384_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16083156 - 16083384
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATCCTCTAATA
Flanking Amino Acid:
EWENNRLYHKLGLHWKLSKR
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
80
0.75
1
78.6
31
Major PPT
83
0.74
0.8
81.1
35.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
55.3
0.16
1.6
65.39
34.4

Associated Gene:

Gene:
CHIC1
Ensembl Gene ID:
ENSAPLG00000003475
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037357
16065499 - 16083498
18000
ENSAPLT00000009426
16065536 - 16084248
18713
ENSAPLT00000003549
16065536 - 16083498
17963