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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16091886_16094862_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16091886 - 16094862
Intron Length:
2977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATATCT
Flanking Amino Acid:
TGKQEDGPISGHAESSHPLQ
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
69.2
0.43
1
63.1
42.6
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
65.5
0.57
1.9
88.83
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699