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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16096454_16097771_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16096454 - 16097771
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGTTTGAATA
Flanking Amino Acid:
GNIKTGAPSYMGTPMNLNLK
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
78.4
0.64
0.8
73.8
30.3
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
59.9
0.31
1.5
71.08
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699