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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16098990_16101546_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16098990 - 16101546
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCT
5'SS Class:
major
3'SS Sequence:
CTGCCTTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CCAATATTAACC
Flanking Amino Acid:
SFEDKPWRKPGADLSDYFNY
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.1
43
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
72.7
0.51
1
72.4
37.7
Minor 5ss
26.6
-2.7
3.4
38.8
46.5
Minor BPS
50
-0
1.7
56.58
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699