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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16101678_16102467_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16101678 - 16102467
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AAGGTATTAACC
Flanking Amino Acid:
PPISTENKITVQQGRTGNAE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.7
38.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81.6
0.71
0.6
81.3
23.7
Minor 5ss
33.4
-1.9
3.6
48.8
47.3
Minor BPS
50.9
0.01
1.7
58.66
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699