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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16102593_16103568_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16102593 - 16103568
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAGAT
U12 Branch Point Sequence:
ATGTCTTTGAGC
Flanking Amino Acid:
GRMKAGPPPNRKLGGTIDVI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
50.8
0.02
1.1
47.1
36.1
Major PPT
72.6
0.51
1
65.9
44.2
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
59.8
0.29
1.6
67.26
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699