About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16108930_16109529_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16108930 - 16109529
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTCTCTCCAAAG
Flanking Amino Acid:
PPALLIPTLDGQPASYNNRQ
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
69.7
0.44
1
70.6
27.8
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
44
-0.5
2
49.23
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699