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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16109586_16110938_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16109586 - 16110938
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCAGGCAAACA
Flanking Amino Acid:
QPPPFGYNSADSGFISYPPI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79
0.65
0.8
73.1
31.8
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
35.9
-1
2.6
52.11
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008548
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008908
16091300 - 16115998
24699