Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16113251_16115794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16113251 - 16115794

Intron Length:

2544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCACCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

TCCTCCCCACCA

Flanking Amino Acid:

EESSKHKSSRRKQHESEEGE

Intron Amino Acid Position:

519

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

67.3

36.7

Major BPS

69.1

0.47

60.7

37.6

Major PPT

68.4

0.41

0.8

61.3

27.5

Minor 5ss

32.2

-2

3.4

43.3

Minor BPS

-0.3

2.1

59.96

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008908

16091300 - 16115998

24699