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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16119570_16121703_R

Intron Information:

Intron Rank:
9
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
16119570 - 16121703
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATCCTGG
5'SS Class:
weak_minor
3'SS Sequence:
GCTAATGTCCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
EQRNKVTLTVNRSLQQEASR
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
45.9
44.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64
0.32
1
53.5
45.5
Minor 5ss
67.6
0.59
1.9
70.4
42.3
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008529
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008874
16119534 - 16139105
19572