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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16121813_16123093_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16121813 - 16123093
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTATG
5'SS Class:
major
3'SS Sequence:
GTCTTCTGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TAAGTCTTGACA
Flanking Amino Acid:
GTPAFRDRRLKCGDEIVAVN
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
75.7
40.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
66.3
0.37
1
66.7
39.3
Minor 5ss
40
-1.1
3
51
39.8
Minor BPS
62.8
0.4
1.4
67.36
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008529
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008874
16119534 - 16139105
19572