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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16123253_16127881_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16123253 - 16127881
Intron Length:
4629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATCT
Flanking Amino Acid:
PLWITWLGLPSYLHCCQDIV
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.8
80.6
31.3
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
66.1
0.58
1.6
78.93
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008529
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008874
16119534 - 16139105
19572