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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16128093_16128259_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16128093 - 16128259
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTACCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATTTACCC
Flanking Amino Acid:
CLFRDGKIKRGDILLSINGI
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
70.1
0.45
1
63.9
37.2
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
58.6
0.25
1.8
70.69
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008529
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008874
16119534 - 16139105
19572