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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16130111_16132633_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16130111 - 16132633
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GGTTTCAGACCC
Flanking Amino Acid:
TPETAAQIIQTSESRVNFVV
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
28.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.5
0.6
0.9
73
31.8
Minor 5ss
34.4
-1.8
3.3
49.3
46.9
Minor BPS
45
-0.4
1.9
57.68
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008529
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008874
16119534 - 16139105
19572