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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16136066_16138642_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16136066 - 16138642
Intron Length:
2577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATACC
5'SS Class:
major
3'SS Sequence:
AATCTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTGTCACTGACA
Flanking Amino Acid:
RCELEAHLQNRCPGFKKYKS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.4
36.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
76.4
0.6
0.9
66.8
39.6
Minor 5ss
29.8
-2.3
2.9
37.5
39.9
Minor BPS
49.6
-0
2
65.54
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008529
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008874
16119534 - 16139105
19572