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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16194260_16196667_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16194260 - 16196667
Intron Length:
2408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTGCCCCTAATG
Flanking Amino Acid:
RFIGDYEANTGALYSRKFTI
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
80.7
0.69
0.8
74.8
34.9
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
52.1
-0
1.8
57.38
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008517
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008847
16189329 - 16198268
8940