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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16196725_16198123_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16196725 - 16198123
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTCATT
Flanking Amino Acid:
VLGGSSVGKTALVVRFLTKR
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.4
0.73
0.9
75.8
37.8
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
62.8
0.48
1.7
81.14
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008517
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008847
16189329 - 16198268
8940