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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16223164_16223252_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16223164 - 16223252
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTACGTTTA
5'SS Class:
major
3'SS Sequence:
TTTCATTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTCCCTAATA
Flanking Amino Acid:
NETRCLNCEAGR*
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
68.5
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.9
78.5
34.3
Minor 5ss
45.6
-0.5
3.1
67.3
43.8
Minor BPS
73.2
0.72
1.6
82.8
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008335
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029801
16205521 - 16223698
18178