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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16225397_16226039_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16225397 - 16226039
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
CTTTGTTTAACC
Flanking Amino Acid:
QCRSKQEAQKRMRVKKLPMI
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
68.7
0.57
1.8
77.59
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008335
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008685
16205521 - 16233411
27891