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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16226238_16228189_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16226238 - 16228189
Intron Length:
1952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AAATCTTCAATC
Flanking Amino Acid:
DLVAVVVHCGSGPNRGHYIT
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
77
0.61
0.9
73.5
31.4
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
58.7
0.25
1.5
63.3
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008335
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008685
16205521 - 16233411
27891