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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16228269_16233309_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16228269 - 16233309
Intron Length:
5041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CTCTCGTTAATT
Flanking Amino Acid:
WLLFDDDIVEKIDAQAIEEF
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
77.9
0.63
0.9
73.7
40.5
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
62.9
0.48
2.1
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008335
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008685
16205521 - 16233411
27891