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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16258189_16258231_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16258189 - 16258231
Intron Length:
43

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCCGAGCAC
5'SS Class:
weak_major
3'SS Sequence:
GTGCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAA
U12 Branch Point Sequence:
AGCACAAGGAGG
Flanking Amino Acid:
QLLAPAAHLPEHVYRPPAGS
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.02
1.3
45.1
39.6
Major BPS
47.8
-0.1
1
52.7
34.2
Major PPT
65.1
0.34
0.9
54.8
36.5
Minor 5ss
14.6
-4.1
3.7
23.8
37.5
Minor BPS
31.9
-1.5
1.8
29.49
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008124
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008426
16256779 - 16261307
4529