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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16260215_16260333_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16260215 - 16260333
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTGCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAT
U12 Branch Point Sequence:
CACCCCACATCC
Flanking Amino Acid:
VTQLDSTVEEVSLQDINMRK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
57.2
0.18
1.3
68.1
38
Major PPT
63.5
0.31
0.9
53.2
36.7
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
40.8
-0.7
1.9
46.4
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008124
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008426
16256779 - 16261307
4529