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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16260469_16261174_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16260469 - 16261174
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
CCCCCCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CAGGTCACAGCT
Flanking Amino Acid:
AAIIKQLGSLSRHAEDIFGE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
62.4
0.28
0.9
57.2
27.1
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
38.7
-0.7
1.9
49.65
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008124
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008426
16256779 - 16261307
4529