About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16291445_16291623_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16291445 - 16291623
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATGT
Flanking Amino Acid:
LGYFVPYMHLVKYVEKEFKE
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.7
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
71.3
0.48
0.9
62.3
38.5
Minor 5ss
31.8
-2.1
3.3
40.1
39.9
Minor BPS
50.4
0.09
1.9
66.57
44.4

Associated Gene:

Gene:
SLC16A2
Ensembl Gene ID:
ENSAPLG00000008070
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008385
16267984 - 16293809
25826