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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16291768_16292547_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16291768 - 16292547
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGTCCCCCAACG
Flanking Amino Acid:
IPGLKKIYLQVASFVLFGIM
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
37.9
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
81.4
0.71
0.8
73.7
36.9
Minor 5ss
40.8
-1
3.1
58.8
45.7
Minor BPS
50.5
-0.1
2
63.5
43.4

Associated Gene:

Gene:
SLC16A2
Ensembl Gene ID:
ENSAPLG00000008070
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008385
16267984 - 16293809
25826