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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1630691_1632609_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1630691 - 1632609
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CTATATTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTTTCTATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.1
0.66
0.8
77.3
36.4
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
55.6
0.25
1.9
77.48
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011608
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012072
1629991 - 1637135
7145