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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1633018_1634592_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1633018 - 1634592
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGGGCTTTCACT
Flanking Amino Acid:
MGATGSQALEKANGS
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
79.5
0.66
0.9
73
37.4
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
54.9
0.24
1.9
71.92
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011608
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012072
1629991 - 1637135
7145