Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16335322_16336007_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16335322 - 16336007

Intron Length:

686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGCTG

5'SS Class:

major

3'SS Sequence:

GGTTTTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

ATGGCATAAAAT

Flanking Amino Acid:

PPVTASFEKLRESDSILLKA

Intron Amino Acid Position:

1454

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

66.2

44.9

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

0.74

0.9

77.3

Minor 5ss

34.4

-1.8

3.4

47.3

48.1

Minor BPS

45.9

-0.2

2.1

64.67

45.4

Associated Gene:

Gene:

NEXMIF

Ensembl Gene ID:

ENSAPLG00000029798

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036694

16335144 - 16357158

22015

ENSAPLT00000019424

16335144 - 16376008

40865