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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16343786_16356943_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
16343786 - 16356943
Intron Length:
13158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TGGAAATGTGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GTTTCTGGAAAT
Flanking Amino Acid:
GLEARPVLAAWLARCSGAWN
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
36.9
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
59
0.2
1.1
51
46.8
Minor 5ss
31.7
-2.1
3.4
39.3
41.1
Minor BPS
49.1
0.01
2.2
74.95
41.5

Associated Gene:

Gene:
NEXMIF
Ensembl Gene ID:
ENSAPLG00000029798
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036694
16335144 - 16357158
22015