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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16343786_16375873_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
16343786 - 16375873
Intron Length:
32088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGGAAATGTGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GTTTCTGGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
59
0.2
1.1
51
46.8
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
49.1
0.01
2.2
74.95
41.5

Associated Gene:

Gene:
NEXMIF
Ensembl Gene ID:
ENSAPLG00000029798
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019424
16335144 - 16376008
40865