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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1634649_1635969_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1634649 - 1635969
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAG
U12 Branch Point Sequence:
CATCACAGCACT
Flanking Amino Acid:
SRHHGQVRLRESLHPPESTT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
48
-0.1
1.5
60.7
37.6
Major PPT
80
0.67
0.8
74
31.1
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
39.6
-0.7
2.2
57.97
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011608
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012072
1629991 - 1637135
7145