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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16481020_16483763_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16481020 - 16483763
Intron Length:
2744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
CCTTCTTTTACA
Flanking Amino Acid:
DADEIIVLDQGKVVERGRHA
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
88.1
0.86
0.7
82.8
25.8
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
64.7
0.46
1.6
70.62
41.9

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907