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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16490001_16490160_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16490001 - 16490160
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTCAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCCTTTTCAATT
Flanking Amino Acid:
KVAIVGGSGSGKSTIVRLLF
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
70.2
37.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.5
0.8
0.8
82.8
32.4
Minor 5ss
27.8
-2.6
2.8
23.9
37.3
Minor BPS
58.3
0.34
1.5
70.72
41.5

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907