About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16491021_16492093_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
16491021 - 16492093

Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAACTGAT

5'SS Class:
strong_major

3'SS Sequence:
CTCCTGTCTTAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCTTCAA

U12 Branch Point Sequence:
GCCTCCGTATTC

Flanking Amino Acid:
MVLASQGIVAGSLSVGDLVM

Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.7
0.79
1.1
81.4
32.7

Major BPS
65.8
0.39
1.1
69.2
36.3

Major PPT
67.7
0.4
1
70.9
33.7

Minor 5ss
39.9
-1.1
3.3
57.8
46.8

Minor BPS
45.7
-0.3
2.2
54.17
44.4

Associated Gene:

Gene:
ABCB7

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

16479899 - 16519805
39907