About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16492269_16493186_R


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
16492269 - 16493186

Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGAGAG

5'SS Class:
strong_major

3'SS Sequence:
GTGCCTATTGTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCATTAT

U12 Branch Point Sequence:
GTCTCATTATTT

Flanking Amino Acid:
DSLLNYETVKYFNNEKYEAQ

Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
89.9
0.94
0.8
75.1
35.1

Major BPS
72.1
0.55
1.1
62.3
43.7

Major PPT
68.9
0.43
0.9
62.8
38.3

Minor 5ss
29.8
-2.3
3.3
37.5
47.2

Minor BPS
55.5
0.25
1.9
73.8
43.2

Associated Gene:

Gene:
ABCB7

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

16479899 - 16519805
39907