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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16494892_16495339_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16494892 - 16495339
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TCATCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTATTTTCACT
Flanking Amino Acid:
ATVATAVLIGYGISRAGAAL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
60.4
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.8
80.9
30.8
Minor 5ss
35
-1.7
3.3
50.1
46.1
Minor BPS
58.5
0.35
1.8
78.29
38.3

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907