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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16495473_16502972_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16495473 - 16502972
Intron Length:
7500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
CAGTGCATAATT
Flanking Amino Acid:
ISLGFLASAKAMNILVPFMF
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
84
0.77
0.7
82
30
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
48.5
-0
2
65.66
45.1

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907