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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16503093_16508921_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16503093 - 16508921
Intron Length:
5829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TCTTTTTCAATA
Flanking Amino Acid:
GGLHTDPKEGLKEIDAKKIV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
79.8
0.67
0.8
77.7
29.7
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
62.5
0.39
1.5
70.41
36.7

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907