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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16509009_16510602_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16509009 - 16510602
Intron Length:
1594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTCACA
Flanking Amino Acid:
YSRPFLEASEIFPRLQLIEK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.8
0.69
0.8
76.6
31
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
62.5
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907