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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16510681_16519553_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16510681 - 16519553
Intron Length:
8873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
TTCTATTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCCTTTCTATT
Flanking Amino Acid:
RARGAPGGGEILPICKQKSW
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
81.6
0.71
0.7
77.5
30.9
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
46.1
-0.2
1.8
64.53
40.4

Associated Gene:

Gene:
ABCB7
Ensembl Gene ID:
ENSAPLG00000008805
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009186
16479899 - 16519805
39907