Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16542634_16543403_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16542634 - 16543403

Intron Length:

770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAGGCAGC

5'SS Class:

major

3'SS Sequence:

TGCTCATTTTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TATCACTTAATA

Flanking Amino Acid:

GNCGVSIMRSGEAMEQGLRD

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

58.4

46.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

58.3

0.19

1.7

69.5

40.7

Minor 5ss

38.8

-1.3

3.2

51.9

45.1

Minor BPS

68.8

0.59

1.4

75.57

Associated Gene:

Gene:

UPRT

Ensembl Gene ID:

ENSAPLG00000008794

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048520

16530583 - 16544740

14158

ENSAPLT00000009146

16530583 - 16545378

14796