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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16544382_16545245_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16544382 - 16545245
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
ILLSLFSTPHGAKSIIQEFP
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1
70.9
39.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
67
0.38
1
67.3
26.7
Minor 5ss
33.5
-1.9
3.2
44.4
43.5
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
UPRT
Ensembl Gene ID:
ENSAPLG00000008794
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009146
16530583 - 16545378
14796