About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16554472_16560346_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16554472 - 16560346
Intron Length:
5875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTATCTCTAACT
Flanking Amino Acid:
EDDGIDEEPHDSTEASSLAI
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.3
39.1
Major BPS
71.3
0.53
1
61.3
37
Major PPT
79.8
0.67
0.8
76.3
32.4
Minor 5ss
36.2
-1.6
3.3
43.3
45.4
Minor BPS
73.2
0.81
1.6
89.76
34

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401