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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16562008_16563169_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16562008 - 16563169
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCACTGAAAT
Flanking Amino Acid:
WLVSRNRSTLEAFSAPVFQN
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
67.7
0.4
1
62.2
38.6
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
59.3
0.37
1.8
81.58
38.7

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401