About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16563303_16565101_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16563303 - 16565101
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATCA
Flanking Amino Acid:
VFKYFIKYWTGELTNGRSKF
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
70.4
0.64
1.6
78.62
38.3

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401