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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_16565223_16566287_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16565223 - 16566287
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTTGTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATATCCTGATTC
Flanking Amino Acid:
CVLKMDHHCPWVNNCIGFSN
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.2
0.68
0.8
73.8
36.8
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
56.3
0.18
1.7
66.86
38.6

Associated Gene:

Gene:
ZDHHC15
Ensembl Gene ID:
ENSAPLG00000008698
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009061
16554388 - 16574788
20401